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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47272971_47273204_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47272971 - 47273204
Intron Length:
234

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
ATG|GCAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTCCTTCTAACA
Flanking Amino Acid:
QVNPDRKNLKWIGLDLVNGK
Intron Amino Acid Position:
488

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
1
90.6
24.4
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
87.5
0.84
0.6
81.1
31
Minor 5ss
30.1
-2.3
3.8
42.6
38.5
Minor BPS
56.2
0.19
1.7
68.77
37.7

Associated Gene:

Gene:
TCP1
Ensembl Gene ID:
ENSAPLG00000006259
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006535
47266407 - 47273418
7012