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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47274558_47276312_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47274558 - 47276312
Intron Length:
1755

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
TTTGTTCTACCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAA
U12 Branch Point Sequence:
TTTGTTCTACCA
Flanking Amino Acid:
VGPISAIRKAIDKAGWTLDQ
Intron Amino Acid Position:
399

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.1
80.4
34
Major BPS
67.4
0.43
1.1
67.9
36.3
Major PPT
80.8
0.69
0.9
74.7
40
Minor 5ss
40.3
-1.1
2.9
61.3
43
Minor BPS
48
-0.1
2
66.77
40.3

Associated Gene:

Gene:
ACAT2
Ensembl Gene ID:
ENSAPLG00000006048
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038021
47270035 - 47281060
11026
ENSAPLT00000006281
47273688 - 47281060
7373