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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47287175_47290657_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
47287175 - 47290657
Intron Length:
3483

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TCCCTCCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTAAA
U12 Branch Point Sequence:
ACTACACTAAAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.4
29.1
Major BPS
65.2
0.38
0.9
65.5
27.9
Major PPT
80.1
0.68
0.7
77
25.1
Minor 5ss
28.5
-2.5
3
35.5
41.2
Minor BPS
46.8
-0.1
2
66.97
42.7

Associated Gene:

Gene:
WTAP
Ensembl Gene ID:
ENSAPLG00000024378
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034824
47286448 - 47310106
23659