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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47290696_47290788_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47290696 - 47290788
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAC
U12 Branch Point Sequence:
TTTTGCTCCACA
Flanking Amino Acid:
MTNEEPLPKKVRLSEADFKV
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
85.8
25.5
Major BPS
74.7
0.62
1.1
65.7
41
Major PPT
82.2
0.73
0.8
76.7
32.1
Minor 5ss
49.9
-0
2.4
66.7
44.7
Minor BPS
51.2
0.03
2.4
75.44
42.2

Associated Gene:

Gene:
WTAP
Ensembl Gene ID:
ENSAPLG00000024378
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034824
47286448 - 47310106
23659