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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47290845_47295555_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47290845 - 47295555
Intron Length:
4711

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAGTGA
5'SS Class:
major
3'SS Sequence:
CTTTCTGCGATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TCTTCAGGAAAA
Flanking Amino Acid:
KVLPRDELILRWKQYEAYVQ
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1
61.7
39.4
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
68.2
0.41
1
65.1
36.4
Minor 5ss
41.5
-0.9
3.2
55.7
48.5
Minor BPS
44.5
-0.4
2.3
62.84
42.9

Associated Gene:

Gene:
WTAP
Ensembl Gene ID:
ENSAPLG00000024378
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034824
47286448 - 47310106
23659