About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47295615_47297359_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47295615 - 47297359
Intron Length:
1745

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTTTG
5'SS Class:
major
3'SS Sequence:
TTAATTCTATTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
GTTTTATTAATT
Flanking Amino Acid:
ALEGKYTDLNSNDVTGLRES
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1.1
73.5
37.9
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
71.7
0.49
0.9
71.6
39
Minor 5ss
46.4
-0.4
2.8
64.2
41.3
Minor BPS
71
0.74
1.5
85.63
34.2

Associated Gene:

Gene:
WTAP
Ensembl Gene ID:
ENSAPLG00000024378
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034824
47286448 - 47310106
23659