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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47297488_47302675_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47297488 - 47302675
Intron Length:
5188

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
TTATTTTGTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTCTTATTT
Flanking Amino Acid:
TKEQEMQECTNQIQYLKQVQ
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
84.2
33.6
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
83.9
0.76
0.9
80
37.3
Minor 5ss
44.6
-0.6
2.9
70.4
39.5
Minor BPS
75.8
0.89
1.5
91.23
32.5

Associated Gene:

Gene:
WTAP
Ensembl Gene ID:
ENSAPLG00000024378
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034824
47286448 - 47310106
23659