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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47302855_47307531_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47302855 - 47307531
Intron Length:
4677

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAACAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTTGTATTCATT
Flanking Amino Acid:
ELSAWKFTPDSQTGKKLMAK
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
76.5
34.2
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
89.3
0.88
0.6
84.3
23.5
Minor 5ss
38
-1.3
3
48.1
47.6
Minor BPS
49.4
0.03
2.1
76.06
41.3

Associated Gene:

Gene:
WTAP
Ensembl Gene ID:
ENSAPLG00000024378
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034824
47286448 - 47310106
23659