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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47314692_47315214_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47314692 - 47315214
Intron Length:
523

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGAGCC
5'SS Class:
major
3'SS Sequence:
TTTTCTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAACAC
U12 Branch Point Sequence:
CACCGAGTAACG
Flanking Amino Acid:
MLCRLAWPGRSGAKLVAPL
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
63.4
35.3
Major BPS
47.8
-0.1
1
53.1
30.9
Major PPT
92.3
0.95
0.6
85.1
29.7
Minor 5ss
26.7
-2.7
3.2
34.9
41.1
Minor BPS
36.6
-1.1
2.4
38.69
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005614
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005809
47314358 - 47322226
7869