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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47315418_47319709_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47315418 - 47319709
Intron Length:
4292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTGTA
5'SS Class:
major
3'SS Sequence:
TCTGCATCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTACTTTTATCT
Flanking Amino Acid:
EEKYKEALAKGDVTAQVSLQ
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1.1
75.3
34.3
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
69.2
0.43
0.8
66.5
34.6
Minor 5ss
38.7
-1.3
3
49.8
46.5
Minor BPS
61.1
0.43
1.6
77.72
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005614
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005809
47314358 - 47322226
7869