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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47319827_47320728_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47319827 - 47320728
Intron Length:
902

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
TCTTTTTTAAAG
Flanking Amino Acid:
LSPNGGGEPKGELMEAIKRD
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
1.1
80
33
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
83.2
0.75
0.9
85.5
26.4
Minor 5ss
31.7
-2.1
3
42.5
44.2
Minor BPS
66.4
0.38
1.4
67.62
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005614
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005809
47314358 - 47322226
7869