Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47371788_47376895_F

Intron Information:

Intron Rank:

130396

Intron Class:

major

Intron Phase:

Intron Coordinates:

47371788 - 47376895

Intron Length:

5108

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTGTA

5'SS Class:

strong_major

3'SS Sequence:

CCATTCTTCTCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTCAA

U12 Branch Point Sequence:

GGGTCTTCAACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.2

1.02

0.7

86.6

22.2

Major BPS

78.2

0.7

79.9

32.6

Major PPT

78.3

0.64

0.8

76.2

32.1

Minor 5ss

30.8

-2.2

3.2

39.9

46.1

Minor BPS

60.1

0.31

1.6

65.26

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020150

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032376

47371568 - 47377884

6317