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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47444784_47454721_R

Intron Information:

Intron Rank:
146659
Intron Class:
major
Intron Phase:
Intron Coordinates:
47444784 - 47454721
Intron Length:
9938

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTATA
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
TCCTCACTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
1.2
87.1
30
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
88.7
0.87
0.7
84
31
Minor 5ss
34.7
-1.7
2.7
42.8
44
Minor BPS
55.3
0.16
2
69.21
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026227
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038037
47426635 - 47455303
28669