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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47458915_47459108_F

Intron Information:

Intron Rank:
132121
Intron Class:
major
Intron Phase:
Intron Coordinates:
47458915 - 47459108
Intron Length:
194

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
CTCACCCATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTCTTCATCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.8
38.7
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
65.8
0.35
0.9
62.7
33.4
Minor 5ss
35.7
-1.6
3
48.8
47
Minor BPS
56.2
0.28
2
80.09
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020997
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020761
47458767 - 47460610
1844