About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47459190_47460396_F

Intron Information:

Intron Rank:
132122
Intron Class:
major
Intron Phase:
Intron Coordinates:
47459190 - 47460396
Intron Length:
1207

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAATGTTT
5'SS Class:
major
3'SS Sequence:
TCTAAATTCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TCTTTCTGACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.1
72.3
39.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
73.5
0.53
0.9
69.7
40.2
Minor 5ss
42.3
-0.9
3.4
56.3
47.9
Minor BPS
61.4
0.44
1.8
80.07
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020997
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020761
47458767 - 47460610
1844