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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47489472_47489602_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47489472 - 47489602
Intron Length:
131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGGATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
ATTTTATTCATT
Flanking Amino Acid:
LPIENLKPNTRKSFMNCTSS
Intron Amino Acid Position:
1079

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
82.9
36.2
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
78.6
0.64
1
75.5
38.4
Minor 5ss
38.7
-1.3
3.4
58.5
45.8
Minor BPS
54.7
0.23
2
78.9
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005370
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031743
47486887 - 47506496
19610