Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47500560_47501516_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

47500560 - 47501516

Intron Length:

957

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGTGAA

5'SS Class:

strong_major

3'SS Sequence:

TTCTTTCTCCTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAATAAA

U12 Branch Point Sequence:

TAATAAATGAGA

Flanking Amino Acid:

KLGGDGRTIVDEKGAPMVSP

Intron Amino Acid Position:

762

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.5

0.91

0.8

79.4

28.8

Major BPS

70.8

0.52

70.6

31.6

Major PPT

82.8

0.74

0.7

77.1

31.7

Minor 5ss

32.1

-2

3.1

36.8

41.9

Minor BPS

39.8

-0.8

2.1

51.58

39.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005370

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031743

47486887 - 47506496

19610

ENSAPLT00000005572

47481935 - 47506496

24562