Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47503194_47504167_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

47503194 - 47504167

Intron Length:

974

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATCTTAT

5'SS Class:

weak_major

3'SS Sequence:

TTCTCTGTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCAGAA

U12 Branch Point Sequence:

TTCTTCAGAATA

Flanking Amino Acid:

RQFVRPPYRQGYNGRPNLTT

Intron Amino Acid Position:

686

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.3

0.62

1.1

76.7

34.9

Major BPS

64.9

0.37

37.5

Major PPT

85.8

0.81

0.8

84.1

30.9

Minor 5ss

62.3

0.41

2.1

75.5

40.6

Minor BPS

54.1

0.13

1.7

68.62

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005370

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031743

47486887 - 47506496

19610

ENSAPLT00000005572

47481935 - 47506496

24562