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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4751081_4751205_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
4751081 - 4751205
Intron Length:
125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTGTTTATC
5'SS Class:
weak_major
3'SS Sequence:
TTTATTTAGAGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATTTCTTTTATT
Flanking Amino Acid:
VRDLQLVTRSAIGRMKEGEE
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.4
0.15
1.1
60.9
37.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
53.2
0.07
1.8
65.4
44.7
Minor 5ss
43.2
-0.7
2.7
59.5
39.2
Minor BPS
71
0.74
1.5
85.88
34

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006347
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006592
4750910 - 4754890
3981