Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4753193_4754851_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4753193 - 4754851

Intron Length:

1659

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTGAGTTCT

5'SS Class:

strong_major

3'SS Sequence:

CCTGCTCTTCTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTAAC

U12 Branch Point Sequence:

TGATTTGTAACT

Flanking Amino Acid:

TADILELDVESVDVDWPPAL

Intron Amino Acid Position:

146

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.8

0.77

0.9

80.3

27.7

Major BPS

74.5

0.61

1.1

75.6

36.6

Major PPT

74.1

0.54

0.8

65.4

36.2

Minor 5ss

39.1

-1.2

2.9

50.9

39.6

Minor BPS

57.4

0.31

76.8

39.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000006347

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006592

4750910 - 4754890

3981