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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4761195_4761303_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4761195 - 4761303
Intron Length:
109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCGTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTCAA
U12 Branch Point Sequence:
TCTTCCGTCACA
Flanking Amino Acid:
LAWQKLIQDCGSNATERPKV
Intron Amino Acid Position:
306

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
71
34.4
Major BPS
70.6
0.51
1
73.3
31.3
Major PPT
77.7
0.62
0.8
71.8
32.8
Minor 5ss
28.7
-2.4
3.5
34
43.2
Minor BPS
55.4
0.16
2.4
74.7
43.3

Associated Gene:

Gene:
REL
Ensembl Gene ID:
ENSAPLG00000006795
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007042
4759675 - 4786091
26417