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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4761936_4762240_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
4761936 - 4762240
Intron Length:
305

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACCTTG
5'SS Class:
weak_major
3'SS Sequence:
TGTAACGGACTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
TGTAGCTTAACA
Flanking Amino Acid:
IFLLCDKVQKDDIEVRFVLD
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.2
69.7
43.7
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
49.6
-0
1.1
40.7
43.6
Minor 5ss
60.6
0.36
2.4
73.2
43.7
Minor BPS
66.9
0.53
1.8
77.16
39.5

Associated Gene:

Gene:
REL
Ensembl Gene ID:
ENSAPLG00000006795
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007042
4759675 - 4786091
26417