About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47693793_47695205_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47693793 - 47695205
Intron Length:
1413

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTATTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ACATTTTTATTT
Flanking Amino Acid:
LLEGLTGKPLPKERGSTRVH
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
75.7
29.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
92.6
0.96
0.7
85.4
34.1
Minor 5ss
37.4
-1.4
3
44.1
44.7
Minor BPS
53.9
0.2
1.5
65.97
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021478
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027404
47691584 - 47714652
23069