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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47698558_47699438_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47698558 - 47699438
Intron Length:
881

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
TGCTGTCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTGTAT
U12 Branch Point Sequence:
TCTGTATGGAGT
Flanking Amino Acid:
LLWSIILHWQVKDVMKNIMS
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
58.9
0.22
1.5
59.6
46.8
Major PPT
79.3
0.66
0.9
72.9
37.4
Minor 5ss
26.2
-2.7
2.9
30.6
42.9
Minor BPS
42
-0.5
2
59.92
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021478
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027404
47691584 - 47714652
23069