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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47703096_47704180_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47703096 - 47704180
Intron Length:
1085

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCGATAC
5'SS Class:
major
3'SS Sequence:
TTTTTTGATGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TCTTTATTAATG
Flanking Amino Acid:
LEIEKLLDPEDVAVQLPDKK
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
68.4
32.9
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
85
0.79
0.9
81.4
35.3
Minor 5ss
31.7
-2.1
3.2
40.9
45.7
Minor BPS
63.7
0.29
1.7
67.73
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021478
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027404
47691584 - 47714652
23069