Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47705114_47705602_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

47705114 - 47705602

Intron Length:

489

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTAAGCTTT

5'SS Class:

strong_major

3'SS Sequence:

GTACTGTTTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGATCAT

U12 Branch Point Sequence:

GCTGGTTGTACT

Flanking Amino Acid:

EVKEQFATHEAFMMELTAHQ

Intron Amino Acid Position:

343

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.2

0.76

81.6

33.2

Major BPS

64.2

0.35

1.2

65.8

Major PPT

74.9

0.56

65.3

45.3

Minor 5ss

55.3

0.18

2.7

73.8

36.4

Minor BPS

41.2

-0.6

2.1

56.75

45.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021478

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027404

47691584 - 47714652

23069