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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47705785_47706502_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47705785 - 47706502
Intron Length:
718

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCCCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
CGTTCCTGATGT
Flanking Amino Acid:
LRVESMDRQSRLHDMLMELQ
Intron Amino Acid Position:
403

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
74.4
37.7
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
80.1
0.68
0.7
73.6
24.6
Minor 5ss
30.9
-2.2
3
42
44.5
Minor BPS
49
0
2.1
69.48
46.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021478
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027404
47691584 - 47714652
23069