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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47706654_47707929_F

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
47706654 - 47707929
Intron Length:
1276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAACTTT
5'SS Class:
weak_major
3'SS Sequence:
TGTGTTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
AAGTTTGTAACA
Flanking Amino Acid:
SLQKQLEEHKSLQNDLETEQ
Intron Amino Acid Position:
454

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
74.9
36.1
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
80.9
0.69
0.9
73.5
41.9
Minor 5ss
53.1
0.1
2.9
73.2
37.6
Minor BPS
50.2
0
2
61.9
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021478
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027404
47691584 - 47714652
23069