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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47708050_47708834_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47708050 - 47708834
Intron Length:
785

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATGT
5'SS Class:
strong_major
3'SS Sequence:
CCTGCTTTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
AGCTCGTGAATA
Flanking Amino Acid:
ATAILEEQLQRLGERWTAVC
Intron Amino Acid Position:
494

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
74.9
36.1
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
77.6
0.62
0.8
72.4
32.2
Minor 5ss
39
-1.2
3.2
56.6
47.5
Minor BPS
48
-0.1
2.1
59.27
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021478
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027404
47691584 - 47714652
23069