Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47708937_47712264_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

47708937 - 47712264

Intron Length:

3328

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTAGTAAC

5'SS Class:

strong_major

3'SS Sequence:

TTTTAATCTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTCCTTTTAATC

Flanking Amino Acid:

LLWQELLEEQCLLKAWLTEK

Intron Amino Acid Position:

528

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.83

1.1

82.6

29.9

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

84.2

0.77

0.8

78.4

34.7

Minor 5ss

32.4

-2

2.5

40.2

Minor BPS

67.3

0.52

1.2

70.66

35.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021478

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027404

47691584 - 47714652

23069