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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4778190_4782577_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4778190 - 4782577
Intron Length:
4388

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTC|GTGAGTAGT
5'SS Class:
major
3'SS Sequence:
GTATGTGCTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTTATTACTT
Flanking Amino Acid:
AEFGPERRVLSFQNLGIQCV
Intron Amino Acid Position:
99

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.3
0.43
1.3
70.5
41.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
70.5
0.46
1
66.1
45.1
Minor 5ss
33.5
-1.9
2.8
43
38.4
Minor BPS
57.7
0.32
1.8
78.9
37.5

Associated Gene:

Gene:
REL
Ensembl Gene ID:
ENSAPLG00000006795
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007042
4759675 - 4786091
26417