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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47784724_47857433_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47784724 - 47857433
Intron Length:
72710

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
GTCGATATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
ATTTACTGAAAT
Flanking Amino Acid:
SSPRYQKLCKDIQAEIDAHN
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
71
0.47
1
66.2
43.8
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
62.4
0.47
1.7
82.41
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004522
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004750
47784580 - 47984659
200080