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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4782727_4785673_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4782727 - 4785673
Intron Length:
2947

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
CGCTTTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
AATATCTAAAGT
Flanking Amino Acid:
ENNKTFPSIQILNYFGKVKI
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
80.5
0.69
0.8
76.2
32.4
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
48.9
-0
2
67.75
43

Associated Gene:

Gene:
REL
Ensembl Gene ID:
ENSAPLG00000006795
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007042
4759675 - 4786091
26417