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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4785806_4786076_R

Intron Information:

Intron Rank:
1
Intron Class:
minor-like
Intron Phase:
0
Intron Coordinates:
4785806 - 4786076
Intron Length:
271

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTGTACTTC
5'SS Class:
weak_minor
3'SS Sequence:
AGGTGGCCCTGAG|C
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
ATTTTTTTAAGG
Flanking Amino Acid:
MALILPYIEIFEQPR
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
49.7
-0
1
49.9
35.2
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
44.3
-0.3
1.7
43.6
42.9
Minor 5ss
53.5
0.12
2.7
72.2
39.6
Minor BPS
64.2
0.31
1.7
68.73
39.3

Associated Gene:

Gene:
REL
Ensembl Gene ID:
ENSAPLG00000006795
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007042
4759675 - 4786091
26417