Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47893240_47904990_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

47893240 - 47904990

Intron Length:

11751

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTCAGCAAA

5'SS Class:

major

3'SS Sequence:

TCCCCCTCTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

ATTTTTTTATTT

Flanking Amino Acid:

EPRRSLHSKTELTPEEKAMR

Intron Amino Acid Position:

202

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.2

0.62

1.3

74.1

38.3

Major BPS

96.5

1.15

0.6

34.2

Major PPT

78.6

0.64

0.7

72.5

25.6

Minor 5ss

34.1

-1.8

2.7

45.6

Minor BPS

0.58

1.5

81.3

34.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004522

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004750

47784580 - 47984659

200080