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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47905260_47907630_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47905260 - 47907630
Intron Length:
2371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTGTA
5'SS Class:
major
3'SS Sequence:
CTTACTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATAAAT
U12 Branch Point Sequence:
TGTCTCTTACTT
Flanking Amino Acid:
SLPDHIEKTTAFREEIAPIN
Intron Amino Acid Position:
292

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1.1
74.8
35.3
Major BPS
62.2
0.3
1.1
68.9
33
Major PPT
82.5
0.73
0.7
80.9
31
Minor 5ss
39.2
-1.2
3.4
59
45.5
Minor BPS
62
0.45
1.6
77.64
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004522
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004750
47784580 - 47984659
200080