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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47907778_47909113_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
47907778 - 47909113
Intron Length:
1336

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTCTTC
5'SS Class:
weak_major
3'SS Sequence:
TGTTTGTGTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
AATTTTGTAAAT
Flanking Amino Acid:
DLNMRWKLLQVSVEDRLKQL
Intron Amino Acid Position:
341

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
67.7
38.4
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
73.8
0.53
1
69.5
41.6
Minor 5ss
66
0.54
2.2
76.6
39.1
Minor BPS
50.2
0.08
2
72.15
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004522
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004750
47784580 - 47984659
200080