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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47909193_47914508_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47909193 - 47914508
Intron Length:
5316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTTCT
5'SS Class:
major
3'SS Sequence:
CTTATTTCCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TGTTTTCTAATA
Flanking Amino Acid:
FGPASQHFLSTSVQFPWQRS
Intron Amino Acid Position:
367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
75.5
35
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
82.3
0.73
0.8
80.7
31.2
Minor 5ss
45
-0.5
2.8
65.4
39.4
Minor BPS
60.7
0.33
1.6
72.09
33.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004522
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004750
47784580 - 47984659
200080