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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47925960_47926945_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47925960 - 47926945
Intron Length:
986

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TCTGCTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAG
U12 Branch Point Sequence:
CTGCTCACATTT
Flanking Amino Acid:
PKMTDLFQSLADLNNVRFSA
Intron Amino Acid Position:
408

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.8
1.01
0.7
85.8
24.1
Major BPS
72.5
0.56
1.5
71.7
44.6
Major PPT
83.7
0.76
0.8
80.8
31.2
Minor 5ss
30.6
-2.2
2.5
34.4
41.2
Minor BPS
40.2
-0.6
1.9
53.86
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004522
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004750
47784580 - 47984659
200080