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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47927021_47933443_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47927021 - 47933443
Intron Length:
6423

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTTTT
5'SS Class:
major
3'SS Sequence:
TATCTGTTGTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTTTCTCTATCT
Flanking Amino Acid:
KIRRLQKALCLDLLDLNTTS
Intron Amino Acid Position:
433

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.1
77.3
33.6
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
69.7
0.44
1
69.7
41.2
Minor 5ss
43.6
-0.7
3.1
68.1
42.7
Minor BPS
64.7
0.54
1.9
88.58
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004522
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004750
47784580 - 47984659
200080