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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47933646_47940938_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47933646 - 47940938
Intron Length:
7293

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTATAATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
GTCTTTATAATT
Flanking Amino Acid:
CLNWLLNVYDSGRTGKIRVQ
Intron Amino Acid Position:
500

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.4
1.12
0.6
90.5
20.4
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
82.2
0.72
0.9
79
38.3
Minor 5ss
36
-1.6
2.7
44.9
43.2
Minor BPS
57.4
0.31
1.6
72.64
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004522
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004750
47784580 - 47984659
200080