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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47949663_47952061_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47949663 - 47952061
Intron Length:
2399

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGATGA
5'SS Class:
major
3'SS Sequence:
TTACTTTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATAT
Flanking Amino Acid:
EPSVRSCFQQNHNKPEITVK
Intron Amino Acid Position:
582

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
67.6
34
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80.3
0.68
0.8
73.3
36.9
Minor 5ss
33.6
-1.9
3.1
38.5
40.9
Minor BPS
54.6
0.22
1.8
76.72
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004522
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004750
47784580 - 47984659
200080