Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47952229_47954598_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

47952229 - 47954598

Intron Length:

2370

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAAGAGAA

5'SS Class:

strong_major

3'SS Sequence:

AATGTCCCCGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTAAT

U12 Branch Point Sequence:

CTTTGTTTAATG

Flanking Amino Acid:

ICKECPIVGFRYRSLKHFNY

Intron Amino Acid Position:

637

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.4

0.98

0.8

80.4

26.8

Major BPS

81.8

0.79

1.1

34.5

Major PPT

0.29

0.9

56.1

35.3

Minor 5ss

29.7

-2.3

3.3

37.8

Minor BPS

60.9

0.21

1.9

66.31

42.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004522

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004750

47784580 - 47984659

200080