About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47954711_47961936_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47954711 - 47961936
Intron Length:
7226

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
CTTTTTTTTTAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTCTTTTAACT
Flanking Amino Acid:
HYPMVEYCIPTTSGEDVRDF
Intron Amino Acid Position:
675

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
69
35.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
84.7
0.78
0.9
90.3
22.7
Minor 5ss
33.7
-1.9
2.7
43.9
37
Minor BPS
81.3
1.06
1
92.89
28.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004522
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004750
47784580 - 47984659
200080