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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47962074_47963733_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47962074 - 47963733
Intron Length:
1660

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTAAGCTTG
5'SS Class:
major
3'SS Sequence:
TGTCTTTGTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTGT
U12 Branch Point Sequence:
TGTCTTTGTACA
Flanking Amino Acid:
QTVLEGDNLETPITLISMWP
Intron Amino Acid Position:
720

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.3
69.7
43.7
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
80.6
0.69
0.9
75.8
38.2
Minor 5ss
48.8
-0.1
2.8
63.8
41.2
Minor BPS
47.8
-0.1
1.7
61.9
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004522
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004750
47784580 - 47984659
200080