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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47963773_47964013_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47963773 - 47964013
Intron Length:
241

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
TTTCTCAAACTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTCTCAAAC
Flanking Amino Acid:
TLISMWPEQYDPSQSPQLFH
Intron Amino Acid Position:
733

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
71.6
40.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
66.7
0.38
1
61.3
39.1
Minor 5ss
35.2
-1.7
2.8
39
40.2
Minor BPS
68.2
0.55
1.6
79.83
34.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004522
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004750
47784580 - 47984659
200080