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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47965973_47973187_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47965973 - 47973187
Intron Length:
7215

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGT|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
TTTATTGTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CTCTCTTTATCT
Flanking Amino Acid:
LTDSSSNTGSVEDEHALIQQ
Intron Amino Acid Position:
777

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1.1
74.4
36.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
80.7
0.69
0.9
73.6
41.7
Minor 5ss
38
-1.4
2.8
46.6
41.8
Minor BPS
66.5
0.6
1.6
79.06
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004522
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004750
47784580 - 47984659
200080