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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_47973356_47973718_F

Intron Information:

Intron Rank:
20
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
47973356 - 47973718
Intron Length:
363

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TAA|GCATGCTAT
5'SS Class:
major
3'SS Sequence:
AATTTACCAGGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
TCCTCTTCAATT
Flanking Amino Acid:
ADLEEEQRCYNLQIEYEQLK
Intron Amino Acid Position:
833

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.2
61.3
40.1
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
48.1
-0.1
1.7
53.7
40.8
Minor 5ss
43
-0.8
4
63.7
42.5
Minor BPS
64.1
0.52
1.5
75.4
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004522
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004750
47784580 - 47984659
200080