About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_48084442_48086291_R

Intron Information:

Intron Rank:
130565
Intron Class:
major
Intron Phase:
Intron Coordinates:
48084442 - 48086291
Intron Length:
1850

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAATT
5'SS Class:
strong_major
3'SS Sequence:
CATTCCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TTTCCCTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.8
86.3
29
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
81.3
0.7
0.8
77.6
30.8
Minor 5ss
45.5
-0.5
2.9
66.2
44.9
Minor BPS
74.1
0.75
1.7
85.03
34.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017484
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020243
48083564 - 48086329
2766