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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_48109369_48110963_F

Intron Information:

Intron Rank:
144623
Intron Class:
major
Intron Phase:
Intron Coordinates:
48109369 - 48110963
Intron Length:
1595

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGCATA
5'SS Class:
major
3'SS Sequence:
GATTCATTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTCTGATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
72.4
38.6
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
73.2
0.52
0.9
66.8
39.2
Minor 5ss
49.2
-0
2.5
62.6
44.1
Minor BPS
60.8
0.32
1.7
74.67
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027926
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031581
48108132 - 48115507
7376